Program Dr_IDXs_SEACLID
  ! Calculating PDSI, SPI, SPEI 
  use netcdf

!------------------------------------------------------------------------------

  Real, parameter    :: amssng = -99., Miss=amssng
  Integer, Parameter :: NMonth = 12, Nmon=NMonth
  Integer, Parameter :: NVar = 2, Nreg = 7, Nmem = 7, Nlead = 6
  Integer, Parameter :: Ncase = 3       !  mod,cli,ann
  Integer, Parameter :: Ncase_1 = 2     ! obs, ens
  Character (Len=3), Parameter :: Case_1(Ncase_1)=(/"obs","ens"/)
  Character (Len=3), Parameter :: Cases(Ncase)=(/"mod","cli","ann"/)
  !Character (Len=3), Parameter :: Cases(Ncase)=(/"obs","cli","ann"/)

  Integer, Allocatable :: Len_SPI(:)
  Real, Allocatable    :: DatBL(:,:), DatTMP(:,:), Rain(:), T2m(:), PET(:) ! For calculating SPI, SPEI

  ! Distribution function's parameters:
  Real, Allocatable    :: beta_spi(:), gamm(:), pzero(:), SPI(:,:,:), SPE(:,:,:)
  Real                 :: beta_spei(0:2), logLogisticParams(0:Nmon,0:2), DisPars(0:Nmon,0:2)
  Logical              :: use_baseline
  Character (Len=5)    :: IDX_nm             ! Name of Drought Index

  Real, Allocatable :: Regs(:,:), Lon(:), Lat(:), xlon(:), xlat(:) 
  Real, Allocatable :: Pr_All(:,:,:,:,:,:,:), T2_All(:,:,:,:,:,:,:)   ! Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel
  Real, Allocatable :: xmem(:), xlead(:), xtime(:)
  Real, Allocatable :: SPEI_All(:,:,:,:,:,:,:)                  ! Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel
  Real, Allocatable :: SPEI_Out(:,:,:,:,:,:,:)                  ! Nlon,Nlat,Nmem,Nlead,Ncase,Nmodel,Nlen

!------------------------------------------------------------------------------
  ! Ensemble:
  Real, Allocatable :: Pr_ens  (:,:,:,:,:), T2_ens(:,:,:,:,:)       ! Nlon,Nlat,Nlead,Ntime,Ncase_1
  Real, Allocatable :: Pet_ens (:,:,:,:,:)
  Real, Allocatable :: SPEI_ens(:,:,:,:,:)                          ! Nlon,Nlat,Ntime,Ncase_1,Nlen

  Real, Allocatable :: Pr_Reg (:,:,:,:), T2_Reg(:,:,:,:) ! (Nreg,Nlead,Ncase_1,Ntime) - Obs va Ens
  Real, Allocatable :: Pet_Reg(:,:,:,:)
  Real, Allocatable :: SPI_Reg(:,:,:,:,:)                ! (Nreg,Nlead,Ncase_1,Ntime,Nlen)

!------------------------------------------------------------------------------
  Character (Len=255) :: Fname, BL_Dir, R_Fname, T_Fname, Out_Dr_Fname
  Character (Len=255) :: Inp_Dir, Out_Dir, Mask_File
  Character (Len=3)   :: TVar, RVar
  Character (Len=10),Allocatable :: Model_nm(:), IDXname(:)
  Logical :: status, Empty

  Integer :: Yr1, Yr2, Nmodel, NYear, maxyrs, Nidx
  Integer :: NLen, Nst, Nlon, Nlat, IO, Ntime, Nt, it, Landpoint
  Integer :: imod, ist, iyr, imw, ivar, isys, system, ilon, ilat
  Integer :: Nt1

!------------------------------------------------------------------------------
! For writing to NC file:
  Real, allocatable, Dimension (:,:,:,:) :: X4d
  Real, allocatable, Dimension (:) :: X1d, Xt, xspi
!------------------------------------------------------------------------------

  Namelist /File_Dir_Names/ Inp_Dir, Mask_File, Out_Dir, TVar, RVar
  Namelist /Data_Info/      Yr1, Yr2, Yr_Ope, Mon_Ope, Nmodel, NLen, Nidx
  Namelist /Model_name/     Model_nm, IDXname
  Namelist /Dr_Timescale/   Len_SPI
!------------------------------------------------------------------------------

  Open (1, file="Namelist_Dr_IDXs.txt", Status="Old")     ! Tinh voi APH 1961-2015

  Read (1, File_Dir_Names)
  Read (1, Data_Info)
  Allocate (Len_SPI(NLen)); Allocate (Model_nm(Nmodel)); Allocate (IDXname(Nidx))
  Read (1, Model_name)
  Read (1, Dr_Timescale)
  Close (1)

  Ntime = (Yr2-Yr1+1)*Nmon; maxyrs = Yr2-Yr1+1; NYear = (Yr_Ope - Yr1 + 1)
  Call Read_Regs 
  print*,"Parameters: Nlat,Nlon,Nst,Nlen,Ntime=",Nlat,Nlon,Nst,Nlen,Ntime

  Call Reinit
  Call Read_all_data
  Allocate (SPEI_Out(Nlon,Nlat,Nmem,Nlead,Ncase,Nmodel,Nlen)); SPEI_Out=Miss
  Do idx=1,Nidx
     Do ilen=1,Nlen
        Call Calc_IDXs (trim(IDXname(idx)),ilen)
        Call Write_Pr_Temp_DrIDXs (trim(IDXname(idx)),ilen)
     Enddo
  Enddo
  !Call Write_Pr_Temp_DrIDXs ("spei")
   CONTAINS
   !------------------------------------------------------------------------------
   Subroutine Calc_IDXs (IDX_nm,ilen)   ! IDX_nm="spi", "spei"
      Character (Len=*) :: IDX_nm
      Integer :: ilen,ist,ilon,ilat,ilead,Nlo,Nla,Nme,Nt,Nt1,Nt2,icas, it1, it2, icpr, ict, icpet
      Real :: tmpr, tmpt, tmpet, alpha, latx
      !Real :: xspi(Ntime)

     ! For calculating SPI, SPEI: T2_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel)
     ! Pr_All(:,:,imem,ilead,it,icas,imod)
      if (Allocated (SPEI_All)) Deallocate (SPEI_All)
      Allocate (SPEI_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel))
      SPEI_All=Miss
      Do imod=1,Nmodel
         Do ilead=1,Nlead
            Nt=(Yr_Ope - Yr1)*Nmon + Mon_Ope + ilead   ! Do dai chuoi SL thuc te (khong tinh Miss)
            if (Allocated (Rain)) Deallocate (Rain)
            if (Allocated (T2m))  Deallocate (T2m)
            Allocate (Rain(Nt),T2m(Nt))
            Do imem=1,Nmem
               !Do ilen=1,Nlen
                  Do icas=1,Ncase
                     Do ilon=1,Nlon
                        Do ilat=1,Nlat
                           if (Regs(ilon,ilat)>0) then
                              use_baseline=.false.; xspi=Miss; latx=Lat(ilat)
                              !Rain(1:Ntime)=Pr_All(ilon,ilat,imem,ilead,1:Ntime,icas,imod)
                              !T2m (1:Ntime)=T2_All(ilon,ilat,imem,ilead,1:Ntime,icas,imod)
                              Rain(1:Nt)=Pr_All(ilon,ilat,imem,ilead,1:Nt,icas,imod)
                              T2m (1:Nt)=T2_All(ilon,ilat,imem,ilead,1:Nt,icas,imod)
                              !Nt1=Min(Length_series (Rain,Ntime,Miss), Length_series (T2m,Ntime,Miss))
                              Nt1=Min(Length_series (Rain,Nt,Miss), Length_series (T2m,Nt,Miss))
                              if (Nt1>0) then
                                 if (IDX_nm=="spi") then
                                    Call Cal_SPI_One_Stn (Rain,Nt1,Len_SPI(ilen),alpha,beta_spi,gamm,pzero,xspi,use_baseline,Miss)
                                    SPEI_All(ilon,ilat,imem,ilead,1:Nt1,icas,imod)=xspi(1:Nt1)
                                 else if (IDX_nm=="spei") then
                                    Call Calc_SPEI_One_Stn (T2m,Rain,latx,Nt1,Nmon,Len_SPI(ilen),logLogisticParams,use_baseline,xspi,Miss)
                                    SPEI_All(ilon,ilat,imem,ilead,1:Nt1,icas,imod)=xspi(1:Nt1)
!print*,Length_series (xspi,Nt1,Miss),xspi(Nt1),Rain(Nt1),T2m(Nt1)
                                 endif
                                 SPEI_Out(ilon,ilat,imem,ilead,icas,imod,ilen)=SPEI_All(ilon,ilat,imem,ilead,Nt,icas,imod) 
!print"(7I5,F8.4)",Len_SPI(ilen),imod,ilead,imem,icas,Nt1,Nt,SPEI_Out(ilon,ilat,imem,ilead,icas,imod,ilen)
!print"(A,10F8.4)","SPEI_All: ",SPEI_All(ilon,ilat,imem,ilead,Nt1-4:Nt1,icas,imod)
                              endif
                           endif
                        Enddo
                     Enddo
                  Enddo
               !Enddo
            Enddo
         Enddo

         !write (Fname,"(A,I1,A)") trim(Out_Dir)//trim(IDX_nm)//"_ens_lead_",ilead,".nc"
         !Call Write_Dr_IDXs_to_file (Fname,ilead) !,Model_nm(imod)) 
      Enddo
   End Subroutine Calc_IDXs
   !------------------------------------------------------------------------------
   Subroutine Write_Pr_Temp_DrIDXs (IDX_nm,ilen)
     Character (Len=*) :: IDX_nm
     Character (Len=250) :: t_unit, Var_nm, Var_ln, var_unit, lon_nm, lat_nm, z_nm, t_nm
     Integer :: i,ilen,ilon,ilat,ilead,Nlo,Nla,Nme,Nt,Nt1,Nt2,icas, it1, it2, icpr, ict, icpet
     Real :: tmpr, tmpt, tmpet, alpha, lat_reg
     Real :: xlead(Nlead)
     Real, Allocatable :: X4d(:,:,:,:),xcase(:)

     ! Write out for testing: SPEI_Out(ilon,ilat,imem,ilead,icas,imod,ilen)
     ! X4d(Nlon,Nlat,Nz,Nlead): Nz=Nmodel*Nmem*Ncase

     !Fname="Areal_mean_Pr_T2_"//trim(IDX_nm)//"_"//trim(Model_nm)//".nc"
     write (Fname,"(A,I2.2,A)") trim(Out_Dir)//"Dr_IDX_"//trim(IDX_nm)//"_",Len_SPI(ilen),".nc"

     Nz=Nmem*Ncase*Nmodel
     Allocate (X4d(Nlon,Nlat,Nz,Nlead),xcase(Nz))

     t_unit="months since 1983-01-01 "; var_unit="-";
     lon_nm="lon"; lat_nm="lat"; z_nm="case"; t_nm="lead"
     Do ilead=1,Nlead; xlead(ilead)=ilead; Enddo
     Do icas=1,Nz; xcase(icas)=icas; Enddo

     Where (IsNaN(SPEI_Out)) SPEI_Out=Miss
     i=0
     Do imod=1,Nmodel
        Do imem=1,Nmem
           Do icas=1,Ncase
              i=i+1
              Do ilead=1,Nlead
                 X4d(:,:,i,ilead)=SPEI_Out(:,:,imem,ilead,icas,imod,ilen)
              Enddo
           Enddo
        Enddo
     Enddo

     write(Var_ln,"(A,I2.2,A)")"Values of "//trim(IDX_nm)//" drought index for timescale ",Len_SPI(ilen), & 
          " month. The order is mod, cli, ann for each member (1..7) then for each model (1..2)"

     Call wr_ncdf_4d (Fname,Lon,Lat,xcase,xlead, Nlon,Nlat,Nz,Nlead,X4d,"dridx", &
                              t_unit,Var_ln,"-",lon_nm, lat_nm, z_nm, t_nm,Miss)
     !Call wr_ncdf_4d_apd (Fname,Pet_Reg,"pet",Nreg,Nlead,Ncase_1,Ntime, &
     !                         Var_ln,"mm/month",lon_nm, lat_nm, z_nm, t_nm,Miss)
     !-----------------------------------------
     Deallocate (X4d,xcase)
   End Subroutine Write_Pr_Temp_DrIDXs
   !------------------------------------------------------------------------------
   Subroutine Reinit
      if (Allocated(T2_All)) Deallocate (T2_All)
      if (Allocated(Pr_All)) Deallocate (Pr_All)

      if (Allocated (Rain))     Deallocate (Rain)
      if (Allocated (T2m))      Deallocate (T2m)
      if (Allocated (PET))      Deallocate (PET)

      if (Allocated (xspi))     Deallocate (xspi)

      if (Allocated (Pr_Reg))   Deallocate (Pr_Reg)
      if (Allocated (T2_Reg))   Deallocate (T2_Reg)
      if (Allocated (Pet_Reg))  Deallocate (Pet_Reg)
      if (Allocated (beta_spi)) Deallocate (beta_spi)
      if (Allocated (gamm))     Deallocate (gamm)
      if (Allocated (pzero))    Deallocate (pzero)
      if (Allocated (SPEI_ens)) Deallocate (SPEI_ens)
      !if (Allocated (Lat))      Deallocate (Lat)
      if (Allocated (X1d))      Deallocate (X1d)

      Allocate (Rain(Ntime),T2m(Ntime),PET(Ntime),xspi(Ntime)) !DatBL(Ntime,Nst),DatTMP(Ntime,Nst))
      Allocate (beta_spi(Nmonth), gamm(Nmonth), pzero(Nmonth))
     ! Allocate (SPEI_ens(Nlon,Nlat,Ntime,Ncase_1,Nlen))                          ! Nlon,Nlat,Ntime,Ncase_1,Nlen

     ! Allocate (Pr_Reg(Nreg,Nlead,Ncase_1,Ntime),T2_Reg(Nreg,Nlead,Ncase_1,Ntime))
     ! Allocate (Pet_Reg(Nreg,Nlead,Ncase_1,Ntime))
     ! Allocate (SPI_Reg(Nreg,Nlead,Ncase_1,Ntime,Nlen))

      Allocate (X1d(Ntime))
   End Subroutine Reinit
   !------------------------------------------------------------------------------
   Subroutine Write_Dr_IDXs_to_file (Fname,ilead) !,Model_nm)
     Character (Len=*) :: Fname !,Model_nm
     Character (Len=250) :: t_unit, Var_nm, Var_ln, var_unit, lon_nm, lat_nm, z_nm, t_nm
     Integer :: it, imem, ilead, ireg, icas, ilen, imod
     Real :: zlev(Nlen)
     Real, Allocatable :: X3d(:,:,:)

     t_unit="months since 1983-01-01 "; var_unit="-";
     lon_nm="lon"; lat_nm="lat"; z_nm="timescale"; t_nm="time"
     Do ilen=1,Nlen; zlev(ilen)=Len_SPI(ilen);  Enddo
     Allocate (X4d(Nlon,Nlat,Nlen,Ntime))
     ! SPEI_ens(Nlon,Nlat,Ntime,Ncase_1,Nlen)
     ! Pr_ens  (Nlon,Nlat,Nlead,Ntime,Ncase_1)
     Do icas=1,Ncase_1
        Do ilen=1,Nlen 
           Do ilon=1,Nlon
              Do ilat=1,Nlat
                 Do it=1,Ntime
                    X4d(ilon,ilat,ilen,it)=SPEI_ens(ilon,ilat,it,icas,ilen)
                 Enddo
              Enddo
           Enddo
        Enddo
        
        write(Var_ln,"(A,I2.2,A,I1)") "SPEI for "//trim(Case_1(icas))//" with timescale in z=1,2,3 corresponding to 1,3,6 month(s) for Leadtime=",ilead
        write(Var_nm,"(A,I2.2)") trim(Case_1(icas)) !//"_",Len_SPI(ilen)
        if (icas==1) then
           Call wr_ncdf_4d (Fname, xlon,xlat,zlev,xtime, Nlon,Nlat,Nlen,Ntime,X4d,Var_nm, &
                              t_unit,Var_ln,var_unit,lon_nm, lat_nm, z_nm, t_nm,Miss)
        else
           Call wr_ncdf_4d_apd (Fname,X4d,Var_nm,Nlon,Nlat,Nlen,Ntime, &
                              Var_ln,var_unit,lon_nm, lat_nm, z_nm, t_nm,Miss)
        endif
     Enddo
     Deallocate (X4d)
     ! Write out Pr and T2m:
     Allocate (X3d(Nlon,Nlat,Ntime))
     X3d(:,:,1:Ntime)=Pr_ens (:,:,ilead,1:Ntime,1)    ! Pr_obs
     Call wr_ncdf_3d_apd (Fname,X3d,"pr_obs",Nlon,Nlat,Ntime,"Pr obs","mm/month",lon_nm,lat_nm,t_nm,Miss)
     X3d(:,:,1:Ntime)=Pr_ens (:,:,ilead,1:Ntime,2)    ! Pr_model_ens
     Call wr_ncdf_3d_apd (Fname,X3d,"pr_ens",Nlon,Nlat,Ntime,"Pr model ens","mm/month",lon_nm,lat_nm,t_nm,Miss)

     X3d(:,:,1:Ntime)=T2_ens (:,:,ilead,1:Ntime,1)    ! T2_obs
     Call wr_ncdf_3d_apd (Fname,X3d,"t2_obs",Nlon,Nlat,Ntime,"T2 obs","C",lon_nm,lat_nm,t_nm,Miss)
     X3d(:,:,1:Ntime)=T2_ens (:,:,ilead,1:Ntime,2)    ! Pr_model_ens
     Call wr_ncdf_3d_apd (Fname,X3d,"t2_ens",Nlon,Nlat,Ntime,"T2 model ens","C",lon_nm,lat_nm,t_nm,Miss)
     Deallocate (X3d)
   End Subroutine Write_Dr_IDXs_to_file
   !------------------------------------------------------------------------------
   Integer Function Length_series (X,Ninp,Miss)
     Integer :: Ninp,i,j
     Real :: X(Ninp), Miss

     j=0
     Do i=Ninp,1,-1
        if (X(i)==Miss) then
           j=j+1
        else
           exit
        endif
     Enddo
     !print*,Ninp,j
     Length_series=Ninp-j
   End Function Length_series
   !------------------------------------------------------------------------------
   Subroutine Read_Regs 
     Integer :: ilon,ilat, ireg, ic,j
     Real :: tmp

     Call rd_ncdf_2d (Mask_File,Lon,Lat,Nlon,Nlat,Regs,"reg")
     Nst=0;
     Do ilon=1,Nlon
        Do ilat=1,Nlat
           if (Int(Regs(ilon,ilat))>0) then
              Nst=Nst+1
           endif
        Enddo
     Enddo
     !print*,"Nst=",Nst; pause
   End Subroutine Read_Regs
   !--------------------------------------------------------------------------------
   Integer Function Get_Reg_Points (ireg)
      Integer :: ireg,ilon,ilat,Npoint

      Npoint=0
      Do ilon=1,Nlon
         Do ilat=1,Nlat
            if (Regs(ilon,ilat)==ireg) Npoint=Npoint+1
         Enddo
      Enddo
      Get_Reg_Points = Npoint
   End Function Get_Reg_Points
   !------------------------------------------------------------------------------
   Subroutine Read_all_data ! (Model_nm)
      !Character (Len=*) :: Model_nm
      Integer :: imod,ist,ilon,ilat,ilead,Nlo,Nla,Nme,Nt,icas, it1, it2
      Character (Len=255) :: Fname
      Real, Allocatable :: X4d(:,:,:,:), time(:), xlon(:),xlat(:),xmem(:) !,xtime(:)

      it1=Nmon+1      ! Tinh tu   1/1983  pr_clWRF_lead_01.nc
      !it2=it1+Ntime-1 ! Tinh den 12/2021
      ! Ntime=(Yr2-Yr1)*Nmon - bo nam dau tien 1982
      Allocate (T2_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel))
      Allocate (Pr_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel))
      T2_All=Miss; Pr_All=Miss;
      if (Allocated(X4d))  Deallocate (X4d);  if (Allocated(xmem))  Deallocate (xmem)
      if (Allocated(xlon)) Deallocate (xlon); if (Allocated(xlat))  Deallocate (xlat)
      if (Allocated(time)) Deallocate (time); if (Allocated(xtime)) Deallocate (xtime)
      Do imod=1,Nmodel
         Do ilead=1,Nlead
            write (Fname,"(A,I2.2,A)") trim(Inp_Dir)//trim(TVar)//"_"//trim(Model_nm(imod))//"_lead_",ilead,".nc"
            print*,"Reading ",trim(Fname)
            Do icas=1,Ncase
               Call rd_ncdf_4d (Fname,xlon,xlat,xmem,xtime,Nlo,Nla,Nme,Nt,X4d,trim(Cases(icas)))
               !print*,"Nt,Ntime=",Nt,Ntime,Nt-Nmon; pause
               !if (imod==1.AND.icas==1.AND.ilead==1) then 
               !   Allocate (T2_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel),time(Ntime)); 
               !   T2_All=Miss; time(1:Ntime)=xtime(1:Ntime)    ! Luu lai de write out
               !endif
               Do imem=1,Nmem
                  Do it=1,Ntime
                     T2_All(:,:,imem,ilead,it,icas,imod)=X4d(:,:,imem,Nmon+it)  ! Luu vao T2_All voi time tu Nmon+1 = it1 (Tinh tu   1/1983)
                  Enddo
               Enddo
               Deallocate (xlon,xlat,xmem,xtime,X4d)
            Enddo
            write (Fname,"(A,I2.2,A)") trim(Inp_Dir)//trim(RVar)//"_"//trim(Model_nm(imod))//"_lead_",ilead,".nc"
            Do icas=1,Ncase
               Call rd_ncdf_4d (Fname,xlon,xlat,xmem,xtime,Nlo,Nla,Nme,Nt,X4d,trim(Cases(icas)))
               print*,"Nlo,Nla,Nmem,Ntime=",Nlo,Nla,Nme,Nt
               !if (imod==1.AND.icas==1.AND.ilead==1) then; Allocate (Pr_All(Nlon,Nlat,Nmem,Nlead,Ntime,Ncase,Nmodel)); Pr_All=Miss; endif
               Do imem=1,Nmem
                  Do it=1,Ntime
                     Pr_All(:,:,imem,ilead,it,icas,imod)=X4d(:,:,imem,Nmon+it)   ! Luu vao Pr_All voi time tu Nmon+1 = it1 (Tinh tu   1/1983)
                  Enddo
               Enddo
               Deallocate (xlon,xlat,xmem,xtime,X4d)
            Enddo
            Print*,"Reading data ...LT=",ilead
         Enddo
      Enddo
      Print*,"Nt=",Nt
      !if (Allocated(xtime)) Deallocate (xtime) 
      !Allocate (xtime(Ntime))
      !pause;print*,time
      !xtime(:)=time(:)   ! restore xtime
      !Deallocate (time)
      Print*,"Reading data ... Done"
   End Subroutine Read_all_data
   !------------------------------------------------------------------------------
   Include "/home/tanpv/Mylibs/sub_wr_ncdf_Tan.F90"
   Include "/home/tanpv/Mylibs/sub_rd_ncdf_Tan.F90"
   Include "/home/tanpv/Mylibs/Ave.f90"

   Include "/home/tanpv/Mylibs/Sub_SPI_One_Stn_2023.f90"
   Include "/home/tanpv/Mylibs/Sub_SPEI_One_Stn_2023.f90"
   Include "/home/tanpv/Mylibs/PET_thornthwaite.f90"
   Include "/home/tanpv/Mylibs/Sub_SPEI_One_Stn_PET_2023.f90"

   !Include "/home/tanpv/Mylibs/Sub_SPI.f90"  ! Chuong trinh tinh chi so han SPI
   !Include "/home/tanpv/Mylibs/Sub_SPEI.f90" ! Chuong trinh tinh chi so han SPEI
   Include "/home/tanpv/Mylibs/Sub_Percentile.f90"
   !--------------------------------------------------------------------
   END ! Program
